Index

A

add_header_info() (pyreduce.instruments.common.Instrument method) (pyreduce.instruments.CRIRES_PLUS.CRIRES_PLUS method) (pyreduce.instruments.HARPN.HARPN method) (pyreduce.instruments.HARPS.HARPS method) (pyreduce.instruments.HARPSPOL.HARPSPOL method) (pyreduce.instruments.JWST_MIRI.JWST_MIRI method) (pyreduce.instruments.JWST_NIRISS.JWST_NIRISS method) (pyreduce.instruments.LICK_APF.LICK_APF method) (pyreduce.instruments.MCDONALD.MCDONALD method) (pyreduce.instruments.METIS_IFU.METIS_IFU method) (pyreduce.instruments.METIS_LSS.METIS_LSS method) (pyreduce.instruments.MICADO.MICADO method) (pyreduce.instruments.MOSAIC.MOSAIC method) (pyreduce.instruments.NIRSPEC.NIRSPEC method) (pyreduce.instruments.NTE.NTE method) (pyreduce.instruments.UVES.UVES method) (pyreduce.instruments.XSHOOTER.XSHOOTER method) add_line() (pyreduce.wavelength_calibration.LineList method) air2vac() (in module pyreduce.util)

align() (pyreduce.wavelength_calibration.WavelengthCalibration method) align_manual() (pyreduce.wavelength_calibration.WavelengthCalibration method) AlignmentPlot (class in pyreduce.wavelength_calibration) altitude (pyreduce.instruments.models.InstrumentConfig attribute) AmplifierConfig (class in pyreduce.instruments.models) amplifiers (pyreduce.instruments.models.DetectorConfig attribute) (pyreduce.instruments.models.InstrumentConfig attribute) AmplifiersConfig (class in pyreduce.instruments.models) ANDES_RIZ (class in pyreduce.instruments.ANDES_RIZ) ANDES_UBV (class in pyreduce.instruments.ANDES_UBV) ANDES_YJH (class in pyreduce.instruments.ANDES_YJH) append() (pyreduce.wavelength_calibration.LineList method) apply_alignment_offset() (pyreduce.wavelength_calibration.WavelengthCalibration method) apply_filters() (pyreduce.instruments.common.Instrument method) assemble_amplifiers() (pyreduce.instruments.common.Instrument method) atlas_name (pyreduce.reduce.WavelengthCalibrationFinalize attribute) (pyreduce.wavelength_calibration.WavelengthCalibration attribute) atlas_search_dirs (pyreduce.wavelength_calibration.WavelengthCalibration attribute) auto_id() (pyreduce.wavelength_calibration.WavelengthCalibration method)

B

BackgroundScatter (class in pyreduce.reduce) bad_pixel_mask (pyreduce.instruments.models.AmplifierConfig attribute) (pyreduce.instruments.models.DetectorConfig attribute) beam_arms (pyreduce.instruments.models.OpticalPathConfig attribute) BeamArmConfig (class in pyreduce.instruments.models) best_fit() (in module pyreduce.trace) bezier_interp() (in module pyreduce.util) Bias (class in pyreduce.reduce)

bias() (pyreduce.pipeline.Pipeline method) bias_scaling (pyreduce.reduce.CalibrationStep attribute) border_width (pyreduce.reduce.Trace attribute) bottom() (in module pyreduce.util) build_2d_solution() (pyreduce.wavelength_calibration.WavelengthCalibration method) build_step_solution() (pyreduce.wavelength_calibration.WavelengthCalibration method) bundle_centers (pyreduce.instruments.models.FiberBundleConfig attribute) bundle_centers_file (pyreduce.instruments.models.FiberBundleConfig attribute) bundles (pyreduce.instruments.models.FibersConfig attribute)

C

calc_scatter_correction() (in module pyreduce.extract) calc_telluric_correction() (in module pyreduce.extract) calculate_AIC() (pyreduce.wavelength_calibration.WavelengthCalibration method) calculate_mean_cluster_thickness() (in module pyreduce.trace) calculate_probability() (in module pyreduce.combine_frames) calculate_residual() (pyreduce.wavelength_calibration.WavelengthCalibration method) calibrate() (pyreduce.reduce.CalibrationStep method) CalibrationStep (class in pyreduce.reduce) category (pyreduce.instruments.models.InstrumentConfig attribute) channel (pyreduce.reduce.Step attribute) ChannelFilter (class in pyreduce.instruments.filters) channelinfo() (in module pyreduce.instruments.instrument_info) channels (pyreduce.instruments.common.Instrument property) (pyreduce.instruments.models.InstrumentConfig attribute) channels_id (pyreduce.instruments.models.InstrumentConfig attribute) classify() (pyreduce.instruments.filters.ChannelFilter method) (pyreduce.instruments.filters.Filter method) (pyreduce.instruments.HARPN.TypeFilter method) (pyreduce.instruments.HARPS.TypeFilter method) clear() (pyreduce.instruments.filters.Filter method) clipnflip() (in module pyreduce.clipnflip) close() (pyreduce.continuum_normalization.Plot_Normalization method) (pyreduce.extract.ProgressPlot method) closing (pyreduce.wavelength_calibration.WavelengthCalibration attribute) collect() (pyreduce.instruments.filters.Filter method) (pyreduce.instruments.filters.NightFilter method) (pyreduce.instruments.HARPS.FiberFilter method) (pyreduce.instruments.HARPS.PolarizationFilter method) column_range (pyreduce.trace_model.Trace attribute), [1] combine() (in module pyreduce.trace)

combine_bias() (in module pyreduce.combine_frames) combine_calibrate() (in module pyreduce.combine_frames) combine_frames() (in module pyreduce.combine_frames) combine_frames_simple() (in module pyreduce.combine_frames) combine_polynomial() (in module pyreduce.combine_frames) COMMON (class in pyreduce.instruments.common) config (pyreduce.instruments.common.Instrument attribute) connect() (pyreduce.wavelength_calibration.AlignmentPlot method) cont (pyreduce.spectra.Spectrum attribute), [1] continuum() (pyreduce.pipeline.Pipeline method) continuum_normalize() (in module pyreduce.continuum_normalization) ContinuumNormalization (class in pyreduce.reduce) convert_bundle_centers_keys() (pyreduce.instruments.models.FiberBundleConfig class method) convert_order_centers_keys() (pyreduce.instruments.models.FibersConfig class method) correct_for_curvature() (in module pyreduce.extract) correlate_cols (pyreduce.reduce.WavelengthCalibrationFinalize attribute) (pyreduce.wavelength_calibration.WavelengthCalibration attribute) count (pyreduce.instruments.models.AmplifiersConfig attribute) (pyreduce.instruments.models.FiberBundleConfig attribute) create_custom_instrument() (in module pyreduce.instruments.common) create_image_from_lines() (pyreduce.wavelength_calibration.WavelengthCalibration method) create_merge_array() (in module pyreduce.trace) create_spectral_model() (in module pyreduce.cwrappers) CRIRES_PLUS (class in pyreduce.instruments.CRIRES_PLUS) Curvature (class in pyreduce.slit_curve) curvature() (pyreduce.pipeline.Pipeline method) curvature_mode (pyreduce.reduce.SlitCurvatureDetermination attribute) curve_degree (pyreduce.reduce.SlitCurvatureDetermination attribute) curve_height (pyreduce.reduce.SlitCurvatureDetermination attribute) cutout_image() (in module pyreduce.util)

D

dark (pyreduce.instruments.models.InstrumentConfig attribute) data (pyreduce.spectra.Spectra attribute), [1] datasec (pyreduce.instruments.models.AmplifiersConfig attribute) date (pyreduce.instruments.models.InstrumentConfig attribute) date_format (pyreduce.instruments.models.InstrumentConfig attribute) dec (pyreduce.instruments.models.InstrumentConfig attribute) degree (pyreduce.reduce.Bias attribute) (pyreduce.reduce.LaserFrequencyCombFinalize attribute) (pyreduce.reduce.WavelengthCalibrationFinalize attribute) (pyreduce.wavelength_calibration.WavelengthCalibration attribute) delete() (in module pyreduce.trace) dependsOn (pyreduce.reduce.Step property)

DetectorConfig (class in pyreduce.instruments.models) detectors (pyreduce.instruments.models.InstrumentConfigV2 attribute) determine_overlap_rating() (in module pyreduce.trace) detsec (pyreduce.instruments.models.AmplifiersConfig attribute) dimensionality (pyreduce.reduce.LaserFrequencyCombFinalize attribute) (pyreduce.reduce.WavelengthCalibrationFinalize attribute) (pyreduce.wavelength_calibration.WavelengthCalibration property) DimensionConfig (class in pyreduce.instruments.models) dimensions (pyreduce.instruments.models.InstrumentConfigV2 attribute) discover_channels() (pyreduce.instruments.common.Instrument method) (pyreduce.instruments.CRIRES_PLUS.CRIRES_PLUS method) (pyreduce.instruments.METIS_IFU.METIS_IFU method) dtype (pyreduce.wavelength_calibration.LineList attribute)

E

emit() (pyreduce.TqdmLoggingHandler method) ensure_list() (pyreduce.instruments.models.InstrumentConfig class method) estimate_background_scatter() (in module pyreduce.estimate_background_scatter) eval() (pyreduce.slit_curve.Curvature method) eval_legacy() (pyreduce.slit_curve.Curvature method) evaluate_solution() (pyreduce.wavelength_calibration.WavelengthCalibration method) evaluate_step_solution() (pyreduce.wavelength_calibration.WavelengthCalibration method) execute() (pyreduce.slit_curve.Curvature method) (pyreduce.wavelength_calibration.WavelengthCalibration method) (pyreduce.wavelength_calibration.WavelengthCalibrationComb method) (pyreduce.wavelength_calibration.WavelengthCalibrationInitialize method) exposure_time (pyreduce.instruments.models.InstrumentConfig attribute) extend_traces() (in module pyreduce.extract) extension (pyreduce.instruments.common.Instrument property) (pyreduce.instruments.models.InstrumentConfig attribute)

extension_template (pyreduce.instruments.models.AmplifiersConfig attribute) extract() (in module pyreduce.extract) (pyreduce.pipeline.Pipeline method) extract_normalize() (in module pyreduce.extract) extract_spectrum() (in module pyreduce.extract) extract_to_arrays() (pyreduce.reduce.ExtractionStep method) extract_with_slitfunc() (in module pyreduce.cwrappers) extraction_height (pyreduce.reduce.SlitCurvatureDetermination attribute) (pyreduce.spectra.Spectrum attribute), [1] extraction_kwargs (pyreduce.reduce.ExtractionStep attribute) (pyreduce.reduce.NormalizeFlatField attribute) extraction_method (pyreduce.reduce.ExtractionStep attribute) (pyreduce.reduce.NormalizeFlatField attribute) ExtractionParams (class in pyreduce.spectra) ExtractionStep (class in pyreduce.reduce)

F

f() (pyreduce.wavelength_calibration.WavelengthCalibration method) fiber_idx (pyreduce.spectra.Spectrum attribute), [1] (pyreduce.trace_model.Trace attribute), [1] FiberBundleConfig (class in pyreduce.instruments.models) FiberFilter (class in pyreduce.instruments.HARPS) FiberGroupConfig (class in pyreduce.instruments.models) fibers (pyreduce.instruments.models.InstrumentConfig attribute) fibers_per_order (pyreduce.instruments.models.FibersConfig attribute) FibersConfig (class in pyreduce.instruments.models) file_types (pyreduce.instruments.models.InstrumentConfigV2 attribute) FileClassification (class in pyreduce.instruments.models) filename() (pyreduce.reduce.RectifyImage method) files (pyreduce.reduce.Step attribute) Filter (class in pyreduce.instruments.filters) filter_type (pyreduce.reduce.Trace attribute) filter_x (pyreduce.reduce.Trace attribute) filter_y (pyreduce.reduce.Trace attribute) Finalize (class in pyreduce.reduce) finalize() (pyreduce.pipeline.Pipeline method) find_files() (pyreduce.instruments.common.Instrument method) find_first_index() (in module pyreduce.instruments.common) (in module pyreduce.util)

fit() (in module pyreduce.trace) (pyreduce.slit_curve.Curvature method) fit_degree (pyreduce.reduce.SlitCurvatureDetermination attribute) (pyreduce.reduce.Trace attribute) fit_lines() (pyreduce.wavelength_calibration.WavelengthCalibration method) fit_polynomials_to_clusters() (in module pyreduce.trace) FitsIOStep (class in pyreduce.reduce) fix_bad_pixels() (in module pyreduce.combine_frames) fix_column_range() (in module pyreduce.extract) fix_extraction_height() (in module pyreduce.extract) fix_parameters() (in module pyreduce.extract) Flat (class in pyreduce.reduce) flat() (pyreduce.pipeline.Pipeline method) freq_comb() (pyreduce.pipeline.Pipeline method) freq_comb_master() (pyreduce.pipeline.Pipeline method) from_files() (pyreduce.pipeline.Pipeline class method) from_header() (pyreduce.spectra.ExtractionParams class method) from_instrument() (pyreduce.pipeline.Pipeline class method) from_list() (pyreduce.wavelength_calibration.LineList class method) from_trace() (pyreduce.spectra.Spectrum class method)

G

g() (pyreduce.wavelength_calibration.WavelengthCalibration method) gain (pyreduce.instruments.models.AmplifierConfig attribute) (pyreduce.instruments.models.AmplifiersConfig attribute) (pyreduce.instruments.models.InstrumentConfig attribute) gaussbroad() (in module pyreduce.util) gaussfit() (in module pyreduce.util) gaussfit2() (in module pyreduce.util) gaussfit3() (in module pyreduce.util) gaussian() (in module pyreduce.slit_curve) gaussval2() (in module pyreduce.util) get() (pyreduce.instruments.common.getter method) (pyreduce.instruments.common.Instrument method) get_amplifier_extensions() (pyreduce.instruments.common.Instrument method) get_arm() (pyreduce.instruments.NIRSPEC.NIRSPEC static method) get_arrays() (pyreduce.spectra.Spectra method) get_configuration_for_instrument() (in module pyreduce.configuration) get_cutoff() (pyreduce.wavelength_calibration.WavelengthCalibrationInitialize method) get_data_dir() (in module pyreduce.datasets) get_dataset() (in module pyreduce.datasets) get_expected_values() (pyreduce.instruments.common.Instrument method) (pyreduce.instruments.CRIRES_PLUS.CRIRES_PLUS method) (pyreduce.instruments.HARPN.HARPN method) (pyreduce.instruments.HARPS.HARPS method) (pyreduce.instruments.HARPSPOL.HARPSPOL method) (pyreduce.instruments.METIS_IFU.METIS_IFU method) (pyreduce.instruments.NEID.NEID method) get_extension() (pyreduce.instruments.common.Instrument method) (pyreduce.instruments.CRIRES_PLUS.CRIRES_PLUS method) (pyreduce.instruments.HARPN.HARPN method) (pyreduce.instruments.HARPS.HARPS method) (pyreduce.instruments.HARPSPOL.HARPSPOL method) (pyreduce.instruments.METIS_IFU.METIS_IFU method) (pyreduce.instruments.METIS_LSS.METIS_LSS method) (pyreduce.instruments.MICADO.MICADO method) get_instrument_info() (in module pyreduce.instruments.instrument_info) get_mask_filename() (pyreduce.instruments.common.Instrument method) (pyreduce.instruments.CRIRES_PLUS.CRIRES_PLUS method) (pyreduce.instruments.HARPSPOL.HARPSPOL method) (pyreduce.instruments.MCDONALD.MCDONALD method) (pyreduce.instruments.METIS_IFU.METIS_IFU method) (pyreduce.instruments.UVES.UVES method)

get_settings_fallbacks() (pyreduce.instruments.common.Instrument method) (pyreduce.instruments.CRIRES_PLUS.CRIRES_PLUS method) get_slitf() (pyreduce.extract.ProgressPlot method) get_spec() (pyreduce.extract.ProgressPlot method) get_supported_channels() (in module pyreduce.instruments.instrument_info) (pyreduce.instruments.common.Instrument method) (pyreduce.instruments.CRIRES_PLUS.CRIRES_PLUS method) (pyreduce.instruments.METIS_IFU.METIS_IFU method) get_traces_for_step() (pyreduce.reduce.Trace method) get_wavecal_filename() (in module pyreduce.instruments.instrument_info) (pyreduce.instruments.ANDES_RIZ.ANDES_RIZ method) (pyreduce.instruments.common.Instrument method) (pyreduce.instruments.CRIRES_PLUS.CRIRES_PLUS method) (pyreduce.instruments.HARPN.HARPN method) (pyreduce.instruments.HARPS.HARPS method) (pyreduce.instruments.HARPSPOL.HARPSPOL method) (pyreduce.instruments.JWST_MIRI.JWST_MIRI method) (pyreduce.instruments.JWST_NIRISS.JWST_NIRISS method) (pyreduce.instruments.LICK_APF.LICK_APF method) (pyreduce.instruments.MCDONALD.MCDONALD method) (pyreduce.instruments.METIS_IFU.METIS_IFU method) (pyreduce.instruments.METIS_LSS.METIS_LSS method) (pyreduce.instruments.MICADO.MICADO method) (pyreduce.instruments.NEID.NEID method) (pyreduce.instruments.NIRSPEC.NIRSPEC method) (pyreduce.instruments.NTE.NTE method) (pyreduce.instruments.UVES.UVES method) (pyreduce.instruments.XSHOOTER.XSHOOTER method) get_wavelength_range() (pyreduce.instruments.ANDES_RIZ.ANDES_RIZ method) (pyreduce.instruments.common.Instrument method) (pyreduce.instruments.CRIRES_PLUS.CRIRES_PLUS method) (pyreduce.instruments.HARPN.HARPN method) (pyreduce.instruments.HARPS.HARPS method) (pyreduce.instruments.HARPSPOL.HARPSPOL method) (pyreduce.instruments.NEID.NEID method) (pyreduce.instruments.NTE.NTE method) get_y_scale() (in module pyreduce.extract) getter (class in pyreduce.instruments.common) group (pyreduce.spectra.Spectrum attribute), [1] (pyreduce.trace_model.Trace attribute), [1] group_fibers() (in module pyreduce.trace) groups (pyreduce.instruments.models.FibersConfig attribute)

H

HARPN (class in pyreduce.instruments.HARPN) HARPS (class in pyreduce.instruments.HARPS) HARPS() (in module pyreduce.datasets) HARPSPOL (class in pyreduce.instruments.HARPSPOL) header (pyreduce.spectra.Spectra attribute), [1] header_key (pyreduce.instruments.models.DimensionConfig attribute)

HeaderRef (class in pyreduce.instruments.models) headers (pyreduce.instruments.models.InstrumentConfigV2 attribute) height (pyreduce.instruments.models.FiberBundleConfig attribute) (pyreduce.instruments.models.FiberGroupConfig attribute) (pyreduce.trace_model.Trace attribute), [1] helcorr() (in module pyreduce.util)

I

id (pyreduce.instruments.models.AmplifierConfig attribute) id_bias (pyreduce.instruments.models.FileClassification attribute) (pyreduce.instruments.models.InstrumentConfig attribute) id_channel (pyreduce.instruments.models.InstrumentConfig attribute) id_comb (pyreduce.instruments.models.FileClassification attribute) (pyreduce.instruments.models.InstrumentConfig attribute) id_curvature (pyreduce.instruments.models.FileClassification attribute) (pyreduce.instruments.models.InstrumentConfig attribute) id_flat (pyreduce.instruments.models.FileClassification attribute) (pyreduce.instruments.models.InstrumentConfig attribute) id_instrument (pyreduce.instruments.common.Instrument property) (pyreduce.instruments.models.InstrumentConfig attribute) (pyreduce.instruments.models.InstrumentConfigV2 attribute) id_orders (pyreduce.instruments.models.FileClassification attribute) (pyreduce.instruments.models.InstrumentConfig attribute) id_scatter (pyreduce.instruments.models.FileClassification attribute) (pyreduce.instruments.models.InstrumentConfig attribute) id_spec (pyreduce.instruments.models.FileClassification attribute) (pyreduce.instruments.models.InstrumentConfig attribute)

id_wave (pyreduce.instruments.models.FileClassification attribute) (pyreduce.instruments.models.InstrumentConfig attribute) identify_lines_for_order() (pyreduce.wavelength_calibration.WavelengthCalibrationInitialize method) image_type (pyreduce.instruments.models.InstrumentConfig attribute) info (pyreduce.instruments.common.Instrument attribute) Instrument (class in pyreduce.instruments.common) instrument (pyreduce.instruments.models.InstrumentConfig attribute) (pyreduce.instruments.models.InstrumentConfigV2 attribute) (pyreduce.reduce.Step attribute) instrument_mode (pyreduce.instruments.models.InstrumentConfig attribute) InstrumentConfig (class in pyreduce.instruments.models) InstrumentConfigV2 (class in pyreduce.instruments.models) InstrumentFilter (class in pyreduce.instruments.filters) interpolate_masked() (in module pyreduce.util) invalid (pyreduce.trace_model.Trace attribute) is_interactive_plot_mode() (in module pyreduce.util) iterations (pyreduce.reduce.WavelengthCalibrationFinalize attribute) (pyreduce.wavelength_calibration.WavelengthCalibration attribute)

J

JWST_MIRI (class in pyreduce.instruments.JWST_MIRI) JWST_MIRI() (in module pyreduce.datasets)

JWST_NIRISS (class in pyreduce.instruments.JWST_NIRISS) JWST_NIRISS() (in module pyreduce.datasets)

K

KECK_NIRSPEC() (in module pyreduce.datasets) key (pyreduce.instruments.models.HeaderRef attribute) kw_bias (pyreduce.instruments.models.FileClassification attribute) (pyreduce.instruments.models.InstrumentConfig attribute) kw_channel (pyreduce.instruments.models.InstrumentConfig attribute) kw_comb (pyreduce.instruments.models.FileClassification attribute) (pyreduce.instruments.models.InstrumentConfig attribute) kw_curvature (pyreduce.instruments.models.FileClassification attribute) (pyreduce.instruments.models.InstrumentConfig attribute)

kw_flat (pyreduce.instruments.models.FileClassification attribute) (pyreduce.instruments.models.InstrumentConfig attribute) kw_orders (pyreduce.instruments.models.FileClassification attribute) (pyreduce.instruments.models.InstrumentConfig attribute) kw_scatter (pyreduce.instruments.models.FileClassification attribute) (pyreduce.instruments.models.InstrumentConfig attribute) kw_spec (pyreduce.instruments.models.FileClassification attribute) (pyreduce.instruments.models.InstrumentConfig attribute) kw_wave (pyreduce.instruments.models.FileClassification attribute) (pyreduce.instruments.models.InstrumentConfig attribute)

L

lambda_sf (pyreduce.spectra.ExtractionParams attribute), [1] lambda_sp (pyreduce.spectra.ExtractionParams attribute), [1] LaserFrequencyCombFinalize (class in pyreduce.reduce) LaserFrequencyCombMaster (class in pyreduce.reduce) latitude (pyreduce.instruments.models.InstrumentConfig attribute) lfc_peak_width (pyreduce.reduce.LaserFrequencyCombFinalize attribute) (pyreduce.wavelength_calibration.WavelengthCalibration attribute) LICK_APF (class in pyreduce.instruments.LICK_APF) LICK_APF() (in module pyreduce.datasets) linearity (pyreduce.instruments.models.AmplifierConfig attribute) LineAtlas (class in pyreduce.wavelength_calibration) LineList (class in pyreduce.wavelength_calibration) load() (pyreduce.pipeline.Pipeline method) (pyreduce.reduce.BackgroundScatter method) (pyreduce.reduce.Bias method) (pyreduce.reduce.ContinuumNormalization method) (pyreduce.reduce.FitsIOStep method) (pyreduce.reduce.Flat method) (pyreduce.reduce.LaserFrequencyCombFinalize method) (pyreduce.reduce.LaserFrequencyCombMaster method) (pyreduce.reduce.Mask method) (pyreduce.reduce.NormalizeFlatField method) (pyreduce.reduce.RectifyImage method) (pyreduce.reduce.ScienceExtraction method) (pyreduce.reduce.SlitCurvatureDetermination method) (pyreduce.reduce.Step method) (pyreduce.reduce.Trace method) (pyreduce.reduce.WavelengthCalibrationFinalize method) (pyreduce.reduce.WavelengthCalibrationInitialize method) (pyreduce.reduce.WavelengthCalibrationMaster method) (pyreduce.wavelength_calibration.LineList class method)

load_config() (in module pyreduce.configuration) load_fits() (pyreduce.instruments.common.Instrument method) (pyreduce.wavelength_calibration.LineAtlas method) load_info() (pyreduce.instruments.common.COMMON method) (pyreduce.instruments.common.Instrument method) load_instrument() (in module pyreduce.instruments.instrument_info) load_settings_override() (in module pyreduce.configuration) load_traces() (in module pyreduce.trace_model) loadDependsOn (pyreduce.reduce.Step property) log_version() (in module pyreduce.util) longitude (pyreduce.instruments.models.InstrumentConfig attribute) lorentzian() (in module pyreduce.slit_curve)

M

m (pyreduce.spectra.Spectrum attribute), [1] (pyreduce.trace_model.Trace attribute), [1] main() (in module pyreduce.cli) (in module pyreduce.reduce) make_bins() (in module pyreduce.extract) make_index() (in module pyreduce.util) make_ref_image() (pyreduce.wavelength_calibration.AlignmentPlot method) make_wave() (pyreduce.wavelength_calibration.WavelengthCalibration method) manual (pyreduce.reduce.Trace attribute) (pyreduce.reduce.WavelengthCalibrationFinalize attribute) (pyreduce.wavelength_calibration.WavelengthCalibration attribute) Mask (class in pyreduce.reduce) mask (pyreduce.spectra.Spectrum property) mask() (pyreduce.pipeline.Pipeline method) match() (pyreduce.instruments.filters.Filter method) (pyreduce.instruments.filters.NightFilter method) MCDONALD (class in pyreduce.instruments.MCDONALD) MCDONALD() (in module pyreduce.datasets) medium (pyreduce.reduce.WavelengthCalibrationFinalize attribute) (pyreduce.wavelength_calibration.WavelengthCalibration attribute) merge (pyreduce.instruments.models.FiberBundleConfig attribute) (pyreduce.instruments.models.FiberGroupConfig attribute) merge_clusters() (in module pyreduce.trace) merge_images() (in module pyreduce.rectify) METIS_IFU (class in pyreduce.instruments.METIS_IFU) METIS_LSS (class in pyreduce.instruments.METIS_LSS) MICADO (class in pyreduce.instruments.MICADO) middle() (in module pyreduce.util) min_cluster (pyreduce.reduce.Trace attribute) min_width (pyreduce.reduce.Trace attribute) mode (pyreduce.slit_curve.Curvature property) model() (in module pyreduce.extract) model_config (pyreduce.instruments.models.AmplifierConfig attribute) (pyreduce.instruments.models.AmplifiersConfig attribute) (pyreduce.instruments.models.BeamArmConfig attribute) (pyreduce.instruments.models.DetectorConfig attribute) (pyreduce.instruments.models.DimensionConfig attribute) (pyreduce.instruments.models.FiberBundleConfig attribute) (pyreduce.instruments.models.FiberGroupConfig attribute) (pyreduce.instruments.models.FibersConfig attribute) (pyreduce.instruments.models.FileClassification attribute) (pyreduce.instruments.models.HeaderRef attribute) (pyreduce.instruments.models.InstrumentConfig attribute) (pyreduce.instruments.models.InstrumentConfigV2 attribute) (pyreduce.instruments.models.OpticalPathConfig attribute) module pyreduce pyreduce.cli pyreduce.clib pyreduce.clipnflip pyreduce.combine_frames pyreduce.configuration pyreduce.continuum_normalization pyreduce.cwrappers pyreduce.datasets pyreduce.echelle pyreduce.estimate_background_scatter pyreduce.extract pyreduce.instruments pyreduce.instruments.ANDES_RIZ pyreduce.instruments.ANDES_UBV pyreduce.instruments.ANDES_YJH pyreduce.instruments.common pyreduce.instruments.CRIRES_PLUS pyreduce.instruments.filters pyreduce.instruments.HARPN pyreduce.instruments.HARPS pyreduce.instruments.HARPSPOL pyreduce.instruments.instrument_info pyreduce.instruments.JWST_MIRI pyreduce.instruments.JWST_NIRISS pyreduce.instruments.LICK_APF pyreduce.instruments.MCDONALD pyreduce.instruments.METIS_IFU pyreduce.instruments.METIS_LSS pyreduce.instruments.MICADO pyreduce.instruments.models pyreduce.instruments.MOSAIC pyreduce.instruments.NEID pyreduce.instruments.NIRSPEC pyreduce.instruments.NTE pyreduce.instruments.UVES pyreduce.instruments.XSHOOTER pyreduce.pipeline pyreduce.rectify pyreduce.reduce pyreduce.slit_curve pyreduce.spectra pyreduce.trace pyreduce.trace_model pyreduce.util pyreduce.wavelength_calibration

MOSAIC (class in pyreduce.instruments.MOSAIC)

N

n (pyreduce.slit_curve.Curvature property) name (pyreduce.instruments.common.Instrument attribute) (pyreduce.instruments.models.BeamArmConfig attribute) (pyreduce.instruments.models.DetectorConfig attribute) (pyreduce.instruments.models.OpticalPathConfig attribute) naxis (pyreduce.instruments.models.DetectorConfig attribute) naxis_x (pyreduce.instruments.models.InstrumentConfig attribute) naxis_y (pyreduce.instruments.models.InstrumentConfig attribute) ncol (pyreduce.spectra.Spectra property) (pyreduce.wavelength_calibration.WavelengthCalibration attribute) NEID (class in pyreduce.instruments.NEID) night (pyreduce.reduce.Step attribute) NightFilter (class in pyreduce.instruments.filters) NIRSPEC (class in pyreduce.instruments.NIRSPEC)

noise (pyreduce.reduce.Trace attribute) noise_relative (pyreduce.reduce.Trace attribute) norm_scaling (pyreduce.reduce.CalibrationStep attribute) normalize() (pyreduce.wavelength_calibration.WavelengthCalibration method) (pyreduce.wavelength_calibration.WavelengthCalibrationInitialize method) normalize_flat() (pyreduce.pipeline.Pipeline method) normalize_list_or_scalar() (pyreduce.instruments.models.InstrumentConfig class method) normalized() (pyreduce.spectra.Spectrum method) NormalizeFlatField (class in pyreduce.reduce) nstep (pyreduce.reduce.WavelengthCalibrationFinalize attribute) (pyreduce.wavelength_calibration.WavelengthCalibration attribute) NTE (class in pyreduce.instruments.NTE) ntrace (pyreduce.slit_curve.Curvature property) (pyreduce.spectra.Spectra property) (pyreduce.wavelength_calibration.WavelengthCalibration attribute)

O

ObjectFilter (class in pyreduce.instruments.filters) observation_date_to_night() (in module pyreduce.instruments.common) (pyreduce.instruments.filters.NightFilter static method) observation_type (pyreduce.instruments.models.InstrumentConfig attribute) on_click() (pyreduce.wavelength_calibration.AlignmentPlot method) opt_filter() (in module pyreduce.util) optical_paths (pyreduce.instruments.models.InstrumentConfigV2 attribute) OpticalPathConfig (class in pyreduce.instruments.models) optimal_extraction() (in module pyreduce.extract) optional (pyreduce.instruments.models.DimensionConfig attribute) order_centers (pyreduce.instruments.models.FibersConfig attribute)

order_centers_file (pyreduce.instruments.models.FibersConfig attribute) organize() (pyreduce.pipeline.Pipeline method) orientation (pyreduce.instruments.common.Instrument property) (pyreduce.instruments.models.DetectorConfig attribute) (pyreduce.instruments.models.InstrumentConfig attribute) osample (pyreduce.spectra.ExtractionParams attribute), [1] output_dir (pyreduce.reduce.Step property) output_file() (pyreduce.reduce.Finalize method) overscan (pyreduce.instruments.models.DetectorConfig attribute) overscan_x (pyreduce.instruments.models.InstrumentConfig attribute) overscan_y (pyreduce.instruments.models.InstrumentConfig attribute)

P

params (pyreduce.spectra.Spectra attribute), [1] parse_channel() (pyreduce.instruments.CRIRES_PLUS.CRIRES_PLUS method) (pyreduce.instruments.METIS_IFU.METIS_IFU method) parse_iraf_section() (in module pyreduce.instruments.common) peak_function (pyreduce.reduce.SlitCurvatureDetermination attribute) peak_threshold (pyreduce.reduce.SlitCurvatureDetermination attribute) peak_width (pyreduce.reduce.SlitCurvatureDetermination attribute) per_order (pyreduce.instruments.models.FibersConfig property) Pipeline (class in pyreduce.pipeline) plot (pyreduce.reduce.Step attribute) (pyreduce.wavelength_calibration.WavelengthCalibration attribute) plot() (pyreduce.continuum_normalization.Plot_Normalization method) (pyreduce.extract.ProgressPlot method) plot2d() (in module pyreduce.util) plot_comparison() (in module pyreduce.extract) (pyreduce.slit_curve.Curvature method) Plot_Normalization (class in pyreduce.continuum_normalization) plot_residuals() (pyreduce.wavelength_calibration.WavelengthCalibration method) plot_results() (pyreduce.slit_curve.Curvature method) (pyreduce.wavelength_calibration.WavelengthCalibration method) plot_title (pyreduce.reduce.Step attribute) plot_trace_pair() (in module pyreduce.trace) plot_traces() (in module pyreduce.trace) (in module pyreduce.util) polarim (pyreduce.wavelength_calibration.WavelengthCalibration attribute) polarization (pyreduce.instruments.models.BeamArmConfig attribute) PolarizationFilter (class in pyreduce.instruments.HARPS) polyfit() (in module pyreduce.wavelength_calibration) polyfit1d() (in module pyreduce.util) polyfit2d() (in module pyreduce.util) polyfit2d_2() (in module pyreduce.util) polyscale2d() (in module pyreduce.util) polyshift2d() (in module pyreduce.util) polyvander2d() (in module pyreduce.util) populate_filters() (pyreduce.instruments.common.Instrument method) pos (pyreduce.trace_model.Trace attribute), [1] prefix (pyreduce.reduce.Step property) prescan (pyreduce.instruments.models.DetectorConfig attribute) prescan_x (pyreduce.instruments.models.InstrumentConfig attribute) prescan_y (pyreduce.instruments.models.InstrumentConfig attribute) ProgressPlot (class in pyreduce.extract) pyreduce module pyreduce.cli module pyreduce.clib module pyreduce.clipnflip module pyreduce.combine_frames module pyreduce.configuration module pyreduce.continuum_normalization module pyreduce.cwrappers module pyreduce.datasets module pyreduce.echelle module pyreduce.estimate_background_scatter module pyreduce.extract module pyreduce.instruments module

pyreduce.instruments.ANDES_RIZ module pyreduce.instruments.ANDES_UBV module pyreduce.instruments.ANDES_YJH module pyreduce.instruments.common module pyreduce.instruments.CRIRES_PLUS module pyreduce.instruments.filters module pyreduce.instruments.HARPN module pyreduce.instruments.HARPS module pyreduce.instruments.HARPSPOL module pyreduce.instruments.instrument_info module pyreduce.instruments.JWST_MIRI module pyreduce.instruments.JWST_NIRISS module pyreduce.instruments.LICK_APF module pyreduce.instruments.MCDONALD module pyreduce.instruments.METIS_IFU module pyreduce.instruments.METIS_LSS module pyreduce.instruments.MICADO module pyreduce.instruments.models module pyreduce.instruments.MOSAIC module pyreduce.instruments.NEID module pyreduce.instruments.NIRSPEC module pyreduce.instruments.NTE module pyreduce.instruments.UVES module pyreduce.instruments.XSHOOTER module pyreduce.pipeline module pyreduce.rectify module pyreduce.reduce module pyreduce.slit_curve module pyreduce.spectra module pyreduce.trace module pyreduce.trace_model module pyreduce.util module pyreduce.wavelength_calibration module

R

ra (pyreduce.instruments.models.InstrumentConfig attribute) range (pyreduce.instruments.models.FiberGroupConfig attribute) read() (in module pyreduce.spectra) (pyreduce.spectra.Spectra static method) read_config() (in module pyreduce.configuration) readnoise (pyreduce.instruments.models.AmplifierConfig attribute) (pyreduce.instruments.models.AmplifiersConfig attribute) (pyreduce.instruments.models.InstrumentConfig attribute) rectify() (pyreduce.pipeline.Pipeline method) rectify_image() (in module pyreduce.rectify) RectifyImage (class in pyreduce.reduce) region (pyreduce.instruments.models.AmplifierConfig attribute) reject_lines() (pyreduce.wavelength_calibration.WavelengthCalibration method) reject_outlier() (pyreduce.wavelength_calibration.WavelengthCalibration method) remove_bias() (in module pyreduce.util) resample() (in module pyreduce.util) results (pyreduce.pipeline.Pipeline property) run() (pyreduce.pipeline.Pipeline method) (pyreduce.reduce.BackgroundScatter method) (pyreduce.reduce.Bias method) (pyreduce.reduce.ContinuumNormalization method) (pyreduce.reduce.Finalize method) (pyreduce.reduce.Flat method) (pyreduce.reduce.LaserFrequencyCombFinalize method) (pyreduce.reduce.LaserFrequencyCombMaster method) (pyreduce.reduce.Mask method) (pyreduce.reduce.NormalizeFlatField method) (pyreduce.reduce.RectifyImage method) (pyreduce.reduce.ScienceExtraction method) (pyreduce.reduce.SlitCurvatureDetermination method) (pyreduce.reduce.Step method) (pyreduce.reduce.Trace method) (pyreduce.reduce.WavelengthCalibrationFinalize method) (pyreduce.reduce.WavelengthCalibrationInitialize method) (pyreduce.reduce.WavelengthCalibrationMaster method)

running_median() (in module pyreduce.combine_frames) running_sum() (in module pyreduce.combine_frames)

S

safe_interpolation() (in module pyreduce.util) save() (pyreduce.reduce.BackgroundScatter method) (pyreduce.reduce.Bias method) (pyreduce.reduce.ContinuumNormalization method) (pyreduce.reduce.Finalize method) (pyreduce.reduce.FitsIOStep method) (pyreduce.reduce.Flat method) (pyreduce.reduce.LaserFrequencyCombFinalize method) (pyreduce.reduce.LaserFrequencyCombMaster method) (pyreduce.reduce.NormalizeFlatField method) (pyreduce.reduce.RectifyImage method) (pyreduce.reduce.ScienceExtraction method) (pyreduce.reduce.SlitCurvatureDetermination method) (pyreduce.reduce.Step method) (pyreduce.reduce.Trace method) (pyreduce.reduce.WavelengthCalibrationFinalize method) (pyreduce.reduce.WavelengthCalibrationInitialize method) (pyreduce.reduce.WavelengthCalibrationMaster method) (pyreduce.spectra.Spectra method) (pyreduce.wavelength_calibration.LineList method) save_config_to_header() (pyreduce.reduce.Finalize method) save_traces() (in module pyreduce.trace_model) savefile (pyreduce.reduce.BackgroundScatter property) (pyreduce.reduce.Bias property) (pyreduce.reduce.ContinuumNormalization property) (pyreduce.reduce.Flat property) (pyreduce.reduce.LaserFrequencyCombMaster property) (pyreduce.reduce.NormalizeFlatField property) (pyreduce.reduce.Trace property) (pyreduce.reduce.WavelengthCalibrationFinalize property) (pyreduce.reduce.WavelengthCalibrationInitialize property) (pyreduce.reduce.WavelengthCalibrationMaster property) savefile_for_group() (pyreduce.reduce.WavelengthCalibrationFinalize method) (pyreduce.reduce.WavelengthCalibrationInitialize method) (pyreduce.reduce.WavelengthCalibrationMaster method) scatter() (pyreduce.pipeline.Pipeline method) scatter_degree (pyreduce.reduce.BackgroundScatter attribute) science_file() (pyreduce.reduce.ScienceExtraction method)

ScienceExtraction (class in pyreduce.reduce) select() (pyreduce.spectra.Spectra method) select_traces_for_step() (in module pyreduce.trace) set_plot_dir() (in module pyreduce.util) set_plot_show() (in module pyreduce.util) shift_window (pyreduce.reduce.WavelengthCalibrationFinalize attribute) (pyreduce.wavelength_calibration.WavelengthCalibration attribute) show_all() (in module pyreduce.util) show_or_save() (in module pyreduce.util) sig (pyreduce.spectra.Spectrum attribute), [1] sigma_cutoff (pyreduce.reduce.SlitCurvatureDetermination attribute) simple_extraction() (in module pyreduce.extract) size (pyreduce.instruments.models.FiberBundleConfig attribute) sky (pyreduce.instruments.models.InstrumentConfig attribute) slit (pyreduce.trace_model.Trace attribute), [1] slit_at_x() (pyreduce.trace_model.Trace method) SlitCurvatureDetermination (class in pyreduce.reduce) slitdelta (pyreduce.trace_model.Trace attribute), [1] slitfu (pyreduce.spectra.Spectrum attribute), [1] slitfunc() (in module pyreduce.cwrappers) slitfunc_curved() (in module pyreduce.cwrappers) sort_files() (in module pyreduce.instruments.instrument_info) (pyreduce.instruments.common.Instrument method) (pyreduce.instruments.JWST_NIRISS.JWST_NIRISS method) (pyreduce.instruments.NIRSPEC.NIRSPEC method) spec (pyreduce.spectra.Spectrum attribute), [1] Spectra (class in pyreduce.spectra) Spectrum (class in pyreduce.spectra) splice_orders() (in module pyreduce.continuum_normalization) split_observation() (pyreduce.instruments.JWST_NIRISS.JWST_NIRISS method) start_logging() (in module pyreduce.util) Step (class in pyreduce.reduce) STEP_CLASSES (pyreduce.pipeline.Pipeline attribute) step_mode (pyreduce.wavelength_calibration.WavelengthCalibration property) STEP_ORDER (pyreduce.pipeline.Pipeline attribute) swap_extension() (in module pyreduce.util) Swath (class in pyreduce.extract) swath_width (pyreduce.spectra.ExtractionParams attribute), [1]

T

target (pyreduce.instruments.models.InstrumentConfig attribute) (pyreduce.reduce.Step attribute) telescope (pyreduce.instruments.models.InstrumentConfig attribute) (pyreduce.instruments.models.InstrumentConfigV2 attribute) threshold (pyreduce.reduce.LaserFrequencyCombFinalize attribute) (pyreduce.reduce.NormalizeFlatField attribute) (pyreduce.reduce.WavelengthCalibrationFinalize attribute) (pyreduce.wavelength_calibration.WavelengthCalibration attribute) to_header() (pyreduce.spectra.ExtractionParams method) top() (in module pyreduce.util) TqdmLoggingHandler (class in pyreduce)

Trace (class in pyreduce.reduce) (class in pyreduce.trace_model) trace() (in module pyreduce.trace) (pyreduce.pipeline.Pipeline method) trace_by (pyreduce.instruments.models.FibersConfig attribute) trace_objects (pyreduce.reduce.Trace attribute) trace_offset (pyreduce.instruments.models.BeamArmConfig attribute) trace_range (pyreduce.reduce.Step attribute) trace_raw() (pyreduce.pipeline.Pipeline method) transpose (pyreduce.instruments.models.InstrumentConfig attribute) TypeFilter (class in pyreduce.instruments.HARPN) (class in pyreduce.instruments.HARPS)

U

update() (in module pyreduce.configuration) update_merge_array() (in module pyreduce.trace)

use (pyreduce.instruments.models.FibersConfig attribute) UVES (class in pyreduce.instruments.UVES) UVES() (in module pyreduce.datasets)

V

vac2air() (in module pyreduce.util) validate_config() (in module pyreduce.configuration) validate_instrument_config() (in module pyreduce.instruments.models)

validate_per_order_config() (pyreduce.instruments.models.FibersConfig method) validate_traces_for_extraction() (in module pyreduce.extract) values (pyreduce.instruments.models.DimensionConfig attribute) VIS_QUADRANTS (pyreduce.instruments.MOSAIC.MOSAIC attribute)

W

wait_if_paused() (pyreduce.extract.ProgressPlot method) wave (pyreduce.spectra.Spectrum attribute), [1] (pyreduce.trace_model.Trace attribute), [1] wavecal() (pyreduce.pipeline.Pipeline method) wavecal_init() (pyreduce.pipeline.Pipeline method) wavecal_master() (pyreduce.pipeline.Pipeline method) wavecal_specifier (pyreduce.instruments.models.InstrumentConfig attribute) wavelength_calibration() (pyreduce.pipeline.Pipeline method) wavelength_range (pyreduce.instruments.models.InstrumentConfig attribute) wavelength_shift (pyreduce.instruments.models.BeamArmConfig attribute)

WavelengthCalibration (class in pyreduce.wavelength_calibration) WavelengthCalibrationComb (class in pyreduce.wavelength_calibration) WavelengthCalibrationFinalize (class in pyreduce.reduce) WavelengthCalibrationInitialize (class in pyreduce.reduce) (class in pyreduce.wavelength_calibration) WavelengthCalibrationMaster (class in pyreduce.reduce) wavelengths_from_traces() (in module pyreduce.reduce) whittaker_smooth() (in module pyreduce.trace) window_width (pyreduce.reduce.SlitCurvatureDetermination attribute) wlen() (pyreduce.trace_model.Trace method)

X

xi_zeta_tensors() (in module pyreduce.cwrappers)

XSHOOTER (class in pyreduce.instruments.XSHOOTER) XSHOOTER() (in module pyreduce.datasets)

Y

y_at_x() (pyreduce.trace_model.Trace method)